Amelie Schreiber's picture

Amelie Schreiber

AmelieSchreiber

·

https://mastodon.social/@OctoNoodle

AI & ML interests

Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.

Recent Activity

liked a model about 2 months ago

tattabio/gLM2_650M

liked a model about 2 months ago

tattabio/gLM2_150M

View all activity

Articles

A New Era in Multistep Enzyme Design

A Guide to Designing New Functional Proteins and Improving Protein Function, Stability, and Diversity with Generative AI

RFDiffusion Potentials

Predicting the Effects of Mutations on Protein Function with ESM-2

Faster Persistent Homology Alignment and Protein Complex Clustering with ESM-2 and Persistence Landscapes

Clustering Protein Complexes using Persistent Homology and Finetuning ESM-2 for PPI Network Prediction

ESM-2 for Generating and Optimizing Peptide Binders for Target Proteins

Persistent Homology Alignment (PHA): Replacing Multiple Sequence Alignments using ESM-2 and Persistent Homology

In Silico Directed Evolution of Protein Sequences with ESM-2 and EvoProtGrad

QLoRA for ESM-2 and Post Translational Modification Site Prediction

Estimating the Intrinsic Dimension of Protein Sequence Embeddings using ESM-2

Predicting Protein-Protein Interactions Using a Protein Language Model and Linear Sum Assignment

ESMBind (ESMB) Ensemble Models

ESMBind (ESMB): Low Rank Adaptation of ESM-2 for Protein Binding Site Prediction

Organizations

AmelieSchreiber's activity

liked 2 models about 2 months ago

tattabio/gLM2_650M

Updated Sep 27, 2024 • 2.09k • 3

tattabio/gLM2_150M

Updated Sep 27, 2024 • 3.48k • 1

upvoted a collection 2 months ago

Cephalo

Cephalo is a series of multimodal vision large language models (V-LLMs) designed to integrate visual and linguistic reasoning in materials science. • 15 items • Updated Oct 25, 2024 • 4

replied to their post 3 months ago

<3

replied to their post 3 months ago

Aww thank you!

published an article 3 months ago

Article

A New Era in Multistep Enzyme Design

By

•

Oct 16, 2024

• 5

updated a model 3 months ago

AmelieSchreiber/AlphaChip

Updated Sep 26, 2024 • 1

liked a Space 3 months ago

Demo_ProTrek_650M_UniRef50

updated a model 4 months ago

AmelieSchreiber/IgDiff

Updated Sep 4, 2024

New activity in microsoft/Graphormer 4 months ago

Protein-Ligand Dataset Missing

#1 opened 4 months ago by

AmelieSchreiber

updated a model 5 months ago

AmelieSchreiber/Graphormer

Updated Aug 20, 2024

updated a collection 5 months ago

Biomedical

19 items • Updated Aug 20, 2024

New activity in hpcai-tech/open-sora 6 months ago

Update README.md

#7 opened 6 months ago by

AmelieSchreiber

updated a Space 7 months ago

Variant Effects LLR

updated a collection 7 months ago

Biomedical

19 items • Updated Aug 20, 2024

posted an update 8 months ago

Post

4001

A list of my favorite articles I've written on Hugging Face (the others are kind of mid imo):
https://huggingface.co/blog/AmelieSchreiber/a-new-era-of-enzyme-engineering

https://huggingface.co/blog/AmelieSchreiber/protein-optimization-and-design

https://huggingface.co/blog/AmelieSchreiber/rfdiffusion-potentials

https://huggingface.co/blog/AmelieSchreiber/mutation-scoring

https://huggingface.co/blog/AmelieSchreiber/esmbind

https://huggingface.co/blog/AmelieSchreiber/esm2-ptm

https://huggingface.co/blog/AmelieSchreiber/directed-evolution-with-esm2

https://huggingface.co/blog/AmelieSchreiber/intrinsic-dimension-of-proteins

https://huggingface.co/blog/AmelieSchreiber/plm-persistent-homology-msa-replacement

https://huggingface.co/blog/AmelieSchreiber/faster-pha

4 replies

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published an article 8 months ago

Article

A Guide to Designing New Functional Proteins and Improving Protein Function, Stability, and Diversity with Generative AI

By

•

Jul 2, 2024

• 40

published an article 9 months ago

Article

RFDiffusion Potentials

By

•

May 14, 2024

• 16