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Workshop/WANT
https://openreview.net/forum?id=6s77hjBNfS
poster
2310.06694
Sheared LLaMA: Accelerating Language Model Pre-training via Structured Pruning
[ "Mengzhou Xia", "Tianyu Gao", "Zhiyuan Zeng", "Danqi Chen" ]
https://huggingface.co/papers/2310.06694
[ "https://github.com/princeton-nlp/llm-shearing" ]
[ "AnishKumbhar/princeton-nlp-Sheared-LLaMA-2.7B", "theodac/princeton-nlp-Sheared-LLaMA-1.3B", "Thenujan/princeton-nlp-Sheared-LLaMA-1.3B", "Kjgarza/metadata_transformer", "Vexvoi/princeton-nlp-Sheared-LLaMA-2.7B" ]
[ "princeton-nlp/Sheared-LLaMA-1.3B", "princeton-nlp/Sheared-LLaMA-2.7B", "llama-moe/LLaMA-MoE-v1-3_5B-4_16", "llama-moe/LLaMA-MoE-v1-3_5B-2_8", "princeton-nlp/Sheared-LLaMA-1.3B-ShareGPT", "llama-moe/LLaMA-MoE-v1-3_0B-2_16", "princeton-nlp/Sheared-LLaMA-2.7B-ShareGPT", "princeton-nlp/Sheared-Pythia-160m", "Aryanne/Sheared-LLaMA-2.7B-gguf", "princeton-nlp/Sheared-LLaMA-2.7B-Pruned", "princeton-nlp/Sheared-LLaMA-1.3B-Pruned", "LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-3.0bpw-h6-exl2", "LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-4.0bpw-h6-exl2", "LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-6.0bpw-h6-exl2", "LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-5.0bpw-h6-exl2", "LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-8.0bpw-h8-exl2", "ahnyeonchan/legendary-river-koalpaca", "gradientai/Sheared-LLaMA-1.3B-ShareGPT-jax", "RichardErkhov/ahnyeonchan_-_legendary-river-koalpaca-gguf" ]
[]
NeurIPS2024
Workshop/WANT
https://openreview.net/forum?id=4qpwILUP5N
poster
2401.03830
A foundation for exact binarized morphological neural networks
[ "Theodore Aouad", "Hugues Talbot" ]
[ "https://github.com/TheodoreAouad/LBQNN2023" ]
[]
[]
[]
NeurIPS2024
Workshop/WANT
https://openreview.net/forum?id=4XtUj6Uzt3
poster
2402.11025
Training Bayesian Neural Networks with Sparse Subspace Variational Inference
[ "Junbo Li", "Zichen Miao", "Qiang Qiu", "Ruqi Zhang" ]
https://huggingface.co/papers/2402.11025
[ "https://github.com/ljb121002/ssvi" ]
[]
[]
[]
NeurIPS2024
Workshop/WANT
https://openreview.net/forum?id=4CLNFKi12w
poster
2311.02428
Task Arithmetic with LoRA for Continual Learning
[ "Rajas Chitale", "Ankit Vaidya", "Aditya Kane", "Archana Santosh Ghotkar" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/WANT
https://openreview.net/forum?id=3GL2GETaaL
poster
2307.02620
Dynamic Observation Policies in Observation Cost-Sensitive Reinforcement Learning
[ "Colin Bellinger", "Mark Crowley", "Isaac Tamblyn" ]
[ "https://github.com/cbellinger27/learning-when-to-observe-in-rl" ]
[]
[]
[]
NeurIPS2024
Workshop/WANT
https://openreview.net/forum?id=2KYHntOYKw
poster
2312.08532
Cooperative Learning for Cost-Adaptive Inference
[ "Xingli Fang", "Richard M Bradford", "Jung-Eun Kim" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/WANT
https://openreview.net/forum?id=0UfULsElsz
poster
2311.18598
Generalisable Agents for Neural Network Optimisation
[ "Kale-ab Tessera", "Callum Rhys Tilbury", "Sasha Abramowitz", "Ruan John de Kock", "Omayma Mahjoub", "Benjamin Rosman", "Sara Hooker", "Arnu Pretorius" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=yQcebEgQfH
oral
2402.04845
AlphaFold Meets Flow Matching for Generating Protein Ensembles
[ "Bowen Jing", "Bonnie Berger", "Tommi Jaakkola" ]
[ "https://github.com/bjing2016/alphaflow" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=y14a0nIECr
oral
2306.12360
Protein Discovery with Discrete Walk-Jump Sampling
[ "Nathan Frey", "Dan Berenberg", "Karina Zadorozhny", "Joseph Kleinhenz", "Julien Lafrance-Vanasse", "Isidro Hotzel", "Yan Wu", "Stephen Ra", "Richard Bonneau", "Kyunghyun Cho", "Vladimir Gligorijevic", "Saeed Saremi" ]
https://huggingface.co/papers/2306.12360
[ "https://github.com/prescient-design/walk-jump" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=vXXEfmYsvS
poster
SecretoGen: towards prediction of signal peptides for efficient protein secretion
[ "Felix Teufel", "Carsten Stahlhut", "Jan Refsgaard", "Henrik Nielsen", "Ole Winther", "Dennis Madsen" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=sWCsSKqkXa
poster
ProteinRL: Reinforcement learning with generative protein language models for property-directed sequence design
[ "Matt Sternke", "Joel Karpiak" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=qP69kXPdJM
poster
Protein generation with evolutionary diffusion: sequence is all you need
[ "Sarah Alamdari", "Nitya Thakkar", "Rianne van den Berg", "Alex Lu", "Nicolo Fusi", "Ava Amini", "Kevin Yang" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=mMKxmeBGTb
poster
In vitro validated antibody design against multiple therapeutic antigens using generative inverse folding
[ "Amir Shanehsazzadeh" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=m2BtAzGzyZ
poster
Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models
[ "Arjuna Subramanian", "Matt Thomson" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=lOIKlYR3vX
poster
Targeting tissues via dynamic human systems modeling in generative design
[ "Zachary Fox", "Nolan English", "Belinda Akpa" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=kzk5Huibm0
oral
2312.05340
Transition Path Sampling with Boltzmann Generator-based MCMC Moves
[ "Michael Plainer", "Hannes Stark", "Charlotte Bunne", "Stephan Günnemann" ]
[ "https://github.com/plainerman/latent-tps" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=jbamDZ374t
poster
Causal Discovery in Gene Regulatory Networks with GFlowNet: Towards Scalability in Large Systems
[ "Trang Nguyen", "Alexander Tong", "Kanika Madan", "Yoshua Bengio", "Dianbo Liu" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=jasx3fgu4G
oral
2309.16064
Masked Autoencoders are Scalable Learners of Cellular Morphology
[ "Oren Kraus", "Kian Kenyon-Dean", "Saber Saberian", "Maryam Fallah", "Peter McLean", "Jess Leung", "Vasudev Sharma", "Ayla Khan", "Jia Balakrishnan", "Safiye Celik", "Maciej Sypetkowski", "Chi Cheng", "Kristen Morse", "Maureen Makes", "Ben Mabey", "Berton Earnshaw" ]
https://huggingface.co/papers/2309.16064
[ "https://github.com/recursionpharma/maes_microscopy" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=itp5RDMlNV
poster
SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design
[ "Wengong Jin", "Caroline Uhler", "Nir Hacohen" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=ineR4aPK9p
oral
Analysis of cellular phenotypes with unbiased image-based generative models
[ "Ruben Fonnegra", "Mohammad Sanian", "Zitong Chen", "Lassi Paavolainen", "Juan Caicedo" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=iO59l1LFvJ
poster
2311.12035
Delta Score: Improving the Binding Assessment of Structure-Based Drug Design Methods
[ "Minsi Ren", "Bowen Gao", "Bo Qiang", "Yanyan Lan" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=iEGdcrWDV1
poster
On Complex Network Dynamics of an In-Vitro Neuronal System during Rest and Gameplay
[ "Moein Khajehnejad", "Forough Habibollahi", "Alon Loeffler", "Brett Kagan", "Adeel Razi" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=htwkLbaFhk
poster
Contextualized Networks Reveal Heterogeneous Transcriptomic Regulation in Tumors at Sample-Specific Resolution
[ "Caleb Ellington", "Ben Lengerich", "Thomas Watkins", "Jiekun Yang", "Hanxi Xiao", "Manolis Kellis", "Eric Xing" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=hYlfUTyp6p
oral
TacoGFN: Target Conditioned GFlowNet for Drug Design
[ "Tony Shen", "Mohit Pandey", "Martin Ester" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=cplCMo4II4
poster
Microenvironment Flows as Protein Engineers
[ "Chengyue Gong", "Lemeng Wu", "Daniel Diaz", "Xingchao Liu", "James Loy", "Adam Klivans", "qiang liu" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=bxZMKHtlL6
oral
AntiFold: Improved antibody structure design using inverse folding
[ "Magnus Høie", "Alissa Hummer", "Tobias Olsen", "Morten Nielsen", "Charlotte Deane" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=bh8dw3guwY
poster
DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
[ "Wei Lu", "Jixian Zhang", "Huang Weifeng", "Ziqiao Zhang", "Chengtao Li", "Shuangjia Zheng" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=bPcgbKDCUQ
poster
Guiding diffusion models for antibody sequence and structure co-design with developability properties
[ "Amelia Villegas-Morcillo", "Jana Weber", "Marcel Reinders" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=b54p3jCgBw
poster
2305.15441
Improving few-shot learning-based protein engineering with evolutionary sampling
[ "Muhammad Zaki Jawaid", "Aayushma Gautam", "T. Gainous", "Dan Hart", "Robin Yeo", "Timothy Daley" ]
[ "https://github.com/SuperSecretBioTech/evolutionary_monte_carlo_search" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=awRjbuWxe4
poster
Inpainting Protein Sequence and Structure with ProtFill
[ "Elizaveta Kozlova", "Arthur Valentin", "Daniel Nakhaee-Zadeh Gutierrez" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Z4ia7s2tpV
oral
2311.13466
Accelerating Inference in Molecular Diffusion Models with Latent Representations of Protein Structure
[ "Ian Dunn", "David Koes" ]
[ "https://github.com/dunni3/keypoint-diffusion" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=YTrlu38mM4
oral
2312.05273
Evaluating Zero-Shot Scoring for In Vitro Antibody Binding Prediction with Experimental Validation
[ "Divya Nori", "Simon Mathis", "Amir Shanehsazzadeh" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=YOGss3XXp0
poster
Fine-tuned protein language models capture T cell receptor stochasticity
[ "Lewis Cornwall", "Grisha Szep", "James Day", "S R Gokul Krishnan", "David Carter", "Jamie Blundell", "Lilly Wollman", "Neil Dalchau", "Aaron Sim" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=XgkYO1S2vM
poster
Harmonic Prior Self-conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design
[ "Hannes Stark", "Bowen Jing", "Regina Barzilay", "Tommi Jaakkola" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=T3ROexdopD
oral
Exploring the building blocks of cell organization as high-order network motifs with graph isomorphism network
[ "Yang Yu", "Shuang Wang", "Dong Xu", "Juexin Wang" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=SckdgVW3Kq
poster
Conditional Generation of Antigen Specific T-cell Receptor Sequences
[ "Dhuvarakesh Karthikeyan", "Colin Raffel", "Benjamin Vincent", "Alex Rubinsteyn" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=SJYY3nQ0cX
poster
Enhancing Language Models for Technical Domains with Dynamic Token Injection
[ "Giorgio Giannone", "Neil Tenenholtz", "James Hall", "Nicolo Fusi", "David Alvarez-Melis" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Qrx0Dt3RBg
poster
Scalable Multimer Structure Prediction using Diffusion Models
[ "Peter Pao-Huang", "Bowen Jing", "Bonnie Berger" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=QrH4bhWhwY
poster
2301.02748
Generative Antibody Design for Complementary Chain Pairing Sequences through Encoder-Decoder Language Model
[ "Simon Chu", "Kathy Wei" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Pa6mFTZY4R
poster
Generative design for gene therapy: An in vivo validated method
[ "Farhan Damani", "David Brookes", "Jeffrey Chan", "Rishi Jajoo", "Alexander Mijalis", "Joyce Samson", "Flaviu Vadan", "Cameron Webster", "Stephen Malina", "Sam Sinai" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=PQa3giMLZp
poster
Bending and Binding: Predicting Protein Flexibility upon Ligand Interaction using Diffusion Models
[ "Xuejin Zhang", "Tomas Geffner", "Matt McPartlon", "Mehmet Akdel", "Dylan Abramson", "Graham Holt", "Alexander Goncearenco", "Luca Naef", "Michael Bronstein" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Od1KtMeAYo
poster
Generating Molecular Conformer Fields
[ "Yuyang Wang", "Ahmed Elhag", "Navdeep Jaitly", "Joshua Susskind", "Miguel Bautista" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Nf5BxVllgq
poster
PoseCheck: Generative Models for 3D Structure-based Drug Design Produce Unrealistic Poses
[ "Charles Harris", "Kieran Didi", "Arian Jamasb", "Chaitanya Joshi", "Simon Mathis", "Pietro Lio", "Tom Blundell" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Mg2DM0F3AY
poster
A deep generative model of single-cell methylomic data
[ "Ethan Weinberger", "Su-In Lee" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=JWfvMT43pZ
poster
2308.11890
Shape-conditioned 3D Molecule Generation via Equivariant Diffusion Models
[ "Ziqi Chen", "Bo Peng", "srinivasan parthasarathy", "Xia Ning" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=JPOW9FToYX
poster
Sampling Protein Language Models for Functional Protein Design
[ "Jeremie Theddy Darmawan", "Yarin Gal", "Pascal Notin" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=HVQoom7ip2
poster
Parameter-Efficient Fine-Tune on Open Pre-trained Transformers for Genomic Sequence
[ "Huixin Zhan", "Zijun Frank Zhang" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=FpUqHQSmqC
poster
2312.02391
Approximation of Intractable Likelihood Functions in Systems Biology via Normalizing Flows
[ "Vincent Zaballa", "Elliot Hui" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=FhFglOZbtZ
oral
The Discovery of Binding Modes Requires Rethinking Docking Generalization
[ "Gabriele Corso", "Arthur Deng", "Nicholas Polizzi", "Regina Barzilay", "Tommi Jaakkola" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=F6LNvZNBsp
poster
regLM: Designing realistic regulatory DNA with autoregressive language models
[ "Avantika Lal", "Tommaso Biancalani", "Gökcen Eraslan" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Enqxq6TWoZ
poster
Epitope-specific antibody design using diffusion models on the latent space of ESM embeddings
[ "Tomer Cohen", "Dina Schneidman-Duhovny" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=Ejw5zOOgLp
poster
An Energy Based Model for Incorporating Sequence Priors for Target-Specific Antibody Design
[ "Yining Huang", "Steffanie Paul", "Debora Marks" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=EKt4NQZ47U
poster
2310.12304
Preference Optimization for Molecular Language Models
[ "Ryan Park", "Ryan Theisen", "Rayees Rahman", "Anna Cichońska", "Marcel Patek", "Navriti Sahni" ]
[ "https://github.com/harmonic-discovery/pref-opt-for-mols" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=E3HN48zjam
poster
2401.05370
Autoregressive fragment-based diffusion for pocket-aware ligand design
[ "Mahdi Ghorbani", "Leo Gendelev", "Paul Beroza", "Michael Keiser" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=DpbMk2KOOX
poster
Genomic language model predicts protein co-regulation and function
[ "Yunha Hwang", "Andre Cornman", "Sergey Ovchinnikov", "Peter Girguis" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=DUjUJCqqA7
poster
Fine-tuning protein Language Models by ranking protein fitness
[ "Minji Lee", "Kyungmin Lee", "Jinwoo Shin" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=D6PJjvaE3D
oral
Amalga: Designable Protein Backbone Generation with Folding and Inverse Folding Guidance
[ "Shugao Chen", "Ziyao Li", "xiangxiang Zeng", "Guolin Ke" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=CsjGuWD7hk
poster
Integrating Protein Structure Prediction and Bayesian Optimization for Peptide Design
[ "Negin Manshour", "Fei He", "Duolin Wang", "Dong Xu" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=ChU7MCLk1J
oral
Binding Oracle: Fine-Tuning From Stability to Binding Free Energy
[ "Chengyue Gong", "Adam Klivans", "Jordan Wells", "James Loy", "qiang liu", "Alex Dimakis", "Daniel Diaz" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=CKCNCW9wxB
poster
Generative AI for designing and validating easily synthesizable and structurally novel antibiotics
[ "Kyle Swanson", "Gary Liu", "Denise Catacutan", "James Zou", "Jonathan Stokes" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=BE2hok0lES
poster
UMD-fit: Generating Realistic Ligand Conformations for Distance-Based Deep Docking Models
[ "Eric Alcaide", "Ziyao Li", "Hang Zheng", "Zhifeng Gao", "Guolin Ke" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=AlPg6if5PU
oral
DiffDock-Site: A Novel Paradigm for Enhanced Protein-Ligand Predictions through Binding Site Identification
[ "Huanlei Guo", "Song Liu", "Mingdi HU", "Yilun Lou", "Bingyi Jing" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=ALsSka1db3
poster
Through the looking glass: navigating in latent space to optimize over combinatorial synthesis libraries
[ "Aryan Pedawi", "Saulo De Oliveira", "Henry van den Bedem" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=9BQ3l8OVru
oral
Generative Flow Networks Assisted Biological Sequence Editing
[ "Pouya M. Ghari", "Alex Tseng", "Gökcen Eraslan", "Romain Lopez", "Tommaso Biancalani", "Gabriele Scalia", "Ehsan Hajiramezanali" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=8PbTU4exnV
poster
Combining Structure and Sequence for Superior Fitness Prediction
[ "Steffanie Paul", "Aaron Kollasch", "Pascal Notin", "Debora Marks" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=73wnK2BvWg
poster
Improving Precision in Language Models Learning from Invalid Samples
[ "Niels Larsen", "Giorgio Giannone", "Ole Winther", "Kai Blin" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=6NtRll9VdH
poster
Machine learning derived embeddings of bulk multi-omics data enable clinically significant representations in a pan-cancer cohort
[ "Sanjay Nagaraj", "ZACHARY MCCAW", "Theofanis Karaletsos", "Daphne Koller", "Anna Shcherbina" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=4k926QVVM4
poster
Target-Aware Variational Auto-Encoders for Ligand Generation with Multi-Modal Protein Modeling
[ "Khang Ngo", "Truong Son Hy" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=4HQtWpQ4WG
oral
TopoDiff: Improving Protein Backbone Generation with Topology-aware Latent Encoding
[ "Yuyang Zhang", "Zinnia Ma", "Haipeng Gong" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=46okCAggF5
oral
CodonBERT: Large Language Models for mRNA design and optimization
[ "Sizhen Li", "Saeed Moayedpour", "Ruijiang Li", "Michael Bailey", "Saleh Riahi", "Milad Miladi", "Jacob Miner", "Dinghai Zheng", "Jun Wang", "Akshay Balsubramani", "Khang Tran", "Minnie", "Monica Wu", "Xiaobo Gu", "Ryan Clinton", "Carla Asquith", "Joseph Skaleski", "Lianne Boeglin", "Sudha Chivukula", "Anusha Dias", "Fernando Ulloa Montoya", "Vikram Agarwal", "Ziv Bar-Joseph", "Sven Jager" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=3mcBKvkwWg
poster
2306.14852
CoarsenConf: Equivariant Coarsening with Aggregated Attention for Molecular Conformer Generation
[ "Danny Reidenbach", "Aditi Krishnapriyan" ]
[ "https://github.com/ask-berkeley/coarsenconf" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=2JkSb52D1n
poster
2310.02066
De Novo Drug Design with Joint Transformers
[ "Adam Izdebski", "Ewelina Weglarz-Tomczak", "Ewa Szczurek", "Jakub Tomczak" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=1wa9JEanV5
poster
2310.19685
DGFN: Double Generative Flow Networks
[ "Elaine Lau", "Nikhil Murali Vemgal", "Doina Precup", "Emmanuel Bengio" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=145TM9VQhx
poster
AMP-Diffusion: Integrating Latent Diffusion with Protein Language Models for Antimicrobial Peptide Generation
[ "Tianlai Chen", "Pranay Vure", "Rishab Pulugurta", "Pranam Chatterjee" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/GenBio
https://openreview.net/forum?id=0gl0SJtd2E
poster
Identifying Neglected Hypotheses in Neurodegenerative Disease with Large Language Models
[ "Spencer Hey", "Darren Angle", "Christopher Chatham" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=y4hgiutGdr
poster
2310.08746
Robustness to Multi-Modal Environment Uncertainty in MARL using Curriculum Learning
[ "Aakriti Agrawal", "Rohith Aralikatti", "Yanchao Sun", "Furong Huang" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=tF464LogjS
poster
Defining and Mitigating Collusion in Multi-Agent Systems
[ "Jack Foxabbott", "Sam Deverett", "Kaspar Senft", "Samuel Dower", "Lewis Hammond" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=eL61LbI4uv
poster
2311.14712
Multiagent Simulators for Social Networks
[ "Aditya Surve", "Archit Rathod", "Mokshit Surana", "Gautam Malpani", "Aneesh Shamraj", "Sainath Reddy Sankepally", "Raghav Jain", "Swapneel S Mehta" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=cYuE7uV4ut
oral
Oracles Followers: Stackelberg Equilibria in Deep Multi-Agent Reinforcement Learning
[ "Matthias Gerstgrasser", "David C. Parkes" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=XjHF5LWbNS
poster
Dynamics Model Based Adversarial Training For Competitive Reinforcement Learning
[ "Xuan Chen", "Guanhong Tao", "Xiangyu Zhang" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=X8mSMsNbff
poster
2402.12673
Beyond Worst-case Attacks: Robust RL with Adaptive Defense via Non-dominated Policies
[ "Xiangyu Liu", "Chenghao Deng", "Yanchao Sun", "Yongyuan Liang", "Furong Huang" ]
https://huggingface.co/papers/2402.12673
[ "https://github.com/umd-huang-lab/protected" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=QWXwhHQHLv
poster
2311.16781
Generation of Games for Opponent Model Differentiation
[ "David Milec", "Viliam Lisý", "Christopher Kiekintveld" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=KOZwk7BFc3
oral
Language Agents as Hackers: Evaluating Cybersecurity Skills with Capture the Flag
[ "John Yang", "Akshara Prabhakar", "Shunyu Yao", "Kexin Pei", "Karthik R Narasimhan" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=HPmhaOTseN
poster
Second-order Jailbreaks: Generative Agents Successfully Manipulate Through an Intermediary
[ "Mikhail Terekhov", "Romain Graux", "Eduardo Neville", "Denis Rosset", "Gabin Kolly" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=FuzJ9abiJb
poster
RAVE: Enabling safety verification for realistic deep reinforcement learning systems
[ "Wenbo Guo", "Taesung Lee", "Kevin Eykholt", "Jiyong Jiang" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=FXZFrOvIoc
poster
A Perfect Collusion Benchmark: How can AI agents be prevented from colluding with information-theoretic undetectability?
[ "Sumeet Ramesh Motwani", "Mikhail Baranchuk", "Lewis Hammond", "Christian Schroeder de Witt" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=CZcIYfiGlL
oral
2311.07815
Cooperative AI via Decentralized Commitment Devices
[ "Xinyuan Sun", "Davide Crapis", "Matt Stephenson", "Jonathan Passerat-Palmbach" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=5U8PGlJt2S
poster
Robust Q-Learning against State Perturbations: a Belief-Enriched Pessimistic Approach
[ "Xiaolin Sun", "Zizhan Zheng" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=5HuBX8LvuT
poster
Assessing Risks of Using Autonomous Language Models in Military and Diplomatic Planning
[ "Gabriel Mukobi", "Ann-Katrin Reuel", "Juan-Pablo Rivera", "Chandler Smith" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=4RFv40DWkp
poster
Stackelberg Games with Side Information
[ "Keegan Harris", "Steven Wu", "Maria Florina Balcan" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=4831vtb6Bp
poster
Safe Equilibrium
[ "Sam Ganzfried" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=3b8hfpqtlM
oral
2312.12564
Leading the Pack: N-player Opponent Shaping
[ "Alexandra Souly", "Timon Willi", "Akbir Khan", "Robert Kirk", "Chris Lu", "Edward Grefenstette", "Tim Rocktäschel" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=1Zb8JjrgSK
poster
2312.16341
Harnessing the Power of Federated Learning in Federated Contextual Bandits
[ "Chengshuai Shi", "Kun Yang", "Ruida Zhou", "Cong Shen" ]
[ "https://github.com/shengroup/fedigw" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=15wSm5uiSE
poster
Decentralized agent-based modeling
[ "Ayush Chopra", "Arnau Quera-Bofarull", "Nurullah Giray Kuru", "Ramesh Raskar" ]
[ "" ]
[]
[]
[]
NeurIPS2024
Workshop/MASEC
https://openreview.net/forum?id=0O5vbRAWol
oral
I See You! Robust Measurement of Adversarial Behavior
[ "Lars Ankile", "Matheus X.V. Ferreira", "David Parkes" ]
[ "" ]
[]
[]
[]
NeurIPS2024
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track
https://openreview.net/forum?id=zogaeVpbaE
oral
2406.10215
DevBench: A multimodal developmental benchmark for language learning
[ "Alvin Wei Ming Tan", "Chunhua Yu", "Bria Lorelle Long", "Wanjing Anya Ma", "Tonya Murray", "Rebecca D. Silverman", "Jason D Yeatman", "Michael Frank" ]
[ "https://github.com/alvinwmtan/dev-bench" ]
[]
[]
[]
NeurIPS2024 D&B
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track
https://openreview.net/forum?id=zgSnSZ0Re6
poster
2402.02500
Point Cloud Matters: Rethinking the Impact of Different Observation Spaces on Robot Learning
[ "Haoyi Zhu", "Yating Wang", "Di Huang", "Weicai Ye", "Wanli Ouyang", "Tong He" ]
[ "https://github.com/haoyizhu/realrobot" ]
[]
[]
[]
NeurIPS2024 D&B
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track
https://openreview.net/forum?id=zg8dpAGl1I
poster
2312.12044
XLand-MiniGrid: Scalable Meta-Reinforcement Learning Environments in JAX
[ "Alexander Nikulin", "Vladislav Kurenkov", "Ilya Zisman", "Artem Sergeevich Agarkov", "Viacheslav Sinii", "Sergey Kolesnikov" ]
https://huggingface.co/papers/2312.12044
[ "https://github.com/corl-team/xland-minigrid" ]
[]
[]
[]
NeurIPS2024 D&B
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track
https://openreview.net/forum?id=zQ3qU0xWZ5
poster
2407.02680
kGym: A Platform and Dataset to Benchmark Large Language Models on Linux Kernel Crash Resolution
[ "Alex Mathai", "Chenxi Huang", "Petros Maniatis", "Aleksandr Nogikh", "Franjo Ivancic", "Junfeng Yang", "Baishakhi Ray" ]
https://huggingface.co/papers/2407.02680
[ "" ]
[]
[]
[]
NeurIPS2024 D&B
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track
https://openreview.net/forum?id=zGfKPqunJG
poster
E^3: Exploring Embodied Emotion Through A Large-Scale Egocentric Video Dataset
[ "Wang Lin", "Yueying Feng", "WenKang Han", "Tao Jin", "Zhou Zhao", "Fei Wu", "Chang Yao", "Jingyuan Chen" ]
[ "" ]
[]
[]
[]
NeurIPS2024 D&B