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Workshop/WANT | https://openreview.net/forum?id=6s77hjBNfS | poster | 2310.06694 | Sheared LLaMA: Accelerating Language Model Pre-training via Structured Pruning | [
"Mengzhou Xia",
"Tianyu Gao",
"Zhiyuan Zeng",
"Danqi Chen"
] | https://huggingface.co/papers/2310.06694 | [
"https://github.com/princeton-nlp/llm-shearing"
] | [
"AnishKumbhar/princeton-nlp-Sheared-LLaMA-2.7B",
"theodac/princeton-nlp-Sheared-LLaMA-1.3B",
"Thenujan/princeton-nlp-Sheared-LLaMA-1.3B",
"Kjgarza/metadata_transformer",
"Vexvoi/princeton-nlp-Sheared-LLaMA-2.7B"
] | [
"princeton-nlp/Sheared-LLaMA-1.3B",
"princeton-nlp/Sheared-LLaMA-2.7B",
"llama-moe/LLaMA-MoE-v1-3_5B-4_16",
"llama-moe/LLaMA-MoE-v1-3_5B-2_8",
"princeton-nlp/Sheared-LLaMA-1.3B-ShareGPT",
"llama-moe/LLaMA-MoE-v1-3_0B-2_16",
"princeton-nlp/Sheared-LLaMA-2.7B-ShareGPT",
"princeton-nlp/Sheared-Pythia-160m",
"Aryanne/Sheared-LLaMA-2.7B-gguf",
"princeton-nlp/Sheared-LLaMA-2.7B-Pruned",
"princeton-nlp/Sheared-LLaMA-1.3B-Pruned",
"LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-3.0bpw-h6-exl2",
"LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-4.0bpw-h6-exl2",
"LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-6.0bpw-h6-exl2",
"LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-5.0bpw-h6-exl2",
"LoneStriker/Sheared-LLaMA-2.7B-ShareGPT-8.0bpw-h8-exl2",
"ahnyeonchan/legendary-river-koalpaca",
"gradientai/Sheared-LLaMA-1.3B-ShareGPT-jax",
"RichardErkhov/ahnyeonchan_-_legendary-river-koalpaca-gguf"
] | [] | NeurIPS2024 |
|
Workshop/WANT | https://openreview.net/forum?id=4qpwILUP5N | poster | 2401.03830 | A foundation for exact binarized morphological neural networks | [
"Theodore Aouad",
"Hugues Talbot"
] | [
"https://github.com/TheodoreAouad/LBQNN2023"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/WANT | https://openreview.net/forum?id=4XtUj6Uzt3 | poster | 2402.11025 | Training Bayesian Neural Networks with Sparse Subspace Variational Inference | [
"Junbo Li",
"Zichen Miao",
"Qiang Qiu",
"Ruqi Zhang"
] | https://huggingface.co/papers/2402.11025 | [
"https://github.com/ljb121002/ssvi"
] | [] | [] | [] | NeurIPS2024 |
|
Workshop/WANT | https://openreview.net/forum?id=4CLNFKi12w | poster | 2311.02428 | Task Arithmetic with LoRA for Continual Learning | [
"Rajas Chitale",
"Ankit Vaidya",
"Aditya Kane",
"Archana Santosh Ghotkar"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/WANT | https://openreview.net/forum?id=3GL2GETaaL | poster | 2307.02620 | Dynamic Observation Policies in Observation Cost-Sensitive Reinforcement Learning | [
"Colin Bellinger",
"Mark Crowley",
"Isaac Tamblyn"
] | [
"https://github.com/cbellinger27/learning-when-to-observe-in-rl"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/WANT | https://openreview.net/forum?id=2KYHntOYKw | poster | 2312.08532 | Cooperative Learning for Cost-Adaptive Inference | [
"Xingli Fang",
"Richard M Bradford",
"Jung-Eun Kim"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/WANT | https://openreview.net/forum?id=0UfULsElsz | poster | 2311.18598 | Generalisable Agents for Neural Network Optimisation | [
"Kale-ab Tessera",
"Callum Rhys Tilbury",
"Sasha Abramowitz",
"Ruan John de Kock",
"Omayma Mahjoub",
"Benjamin Rosman",
"Sara Hooker",
"Arnu Pretorius"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=yQcebEgQfH | oral | 2402.04845 | AlphaFold Meets Flow Matching for Generating Protein Ensembles | [
"Bowen Jing",
"Bonnie Berger",
"Tommi Jaakkola"
] | [
"https://github.com/bjing2016/alphaflow"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=y14a0nIECr | oral | 2306.12360 | Protein Discovery with Discrete Walk-Jump Sampling | [
"Nathan Frey",
"Dan Berenberg",
"Karina Zadorozhny",
"Joseph Kleinhenz",
"Julien Lafrance-Vanasse",
"Isidro Hotzel",
"Yan Wu",
"Stephen Ra",
"Richard Bonneau",
"Kyunghyun Cho",
"Vladimir Gligorijevic",
"Saeed Saremi"
] | https://huggingface.co/papers/2306.12360 | [
"https://github.com/prescient-design/walk-jump"
] | [] | [] | [] | NeurIPS2024 |
|
Workshop/GenBio | https://openreview.net/forum?id=vXXEfmYsvS | poster | SecretoGen: towards prediction of signal peptides for efficient protein secretion | [
"Felix Teufel",
"Carsten Stahlhut",
"Jan Refsgaard",
"Henrik Nielsen",
"Ole Winther",
"Dennis Madsen"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=sWCsSKqkXa | poster | ProteinRL: Reinforcement learning with generative protein language models for property-directed sequence design | [
"Matt Sternke",
"Joel Karpiak"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=qP69kXPdJM | poster | Protein generation with evolutionary diffusion: sequence is all you need | [
"Sarah Alamdari",
"Nitya Thakkar",
"Rianne van den Berg",
"Alex Lu",
"Nicolo Fusi",
"Ava Amini",
"Kevin Yang"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=mMKxmeBGTb | poster | In vitro validated antibody design against multiple therapeutic antigens using generative inverse folding | [
"Amir Shanehsazzadeh"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=m2BtAzGzyZ | poster | Unexplored regions of the protein sequence-structure map revealed at scale by a library of “foldtuned” language models | [
"Arjuna Subramanian",
"Matt Thomson"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=lOIKlYR3vX | poster | Targeting tissues via dynamic human systems modeling in generative design | [
"Zachary Fox",
"Nolan English",
"Belinda Akpa"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=kzk5Huibm0 | oral | 2312.05340 | Transition Path Sampling with Boltzmann Generator-based MCMC Moves | [
"Michael Plainer",
"Hannes Stark",
"Charlotte Bunne",
"Stephan Günnemann"
] | [
"https://github.com/plainerman/latent-tps"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=jbamDZ374t | poster | Causal Discovery in Gene Regulatory Networks with GFlowNet: Towards Scalability in Large Systems | [
"Trang Nguyen",
"Alexander Tong",
"Kanika Madan",
"Yoshua Bengio",
"Dianbo Liu"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=jasx3fgu4G | oral | 2309.16064 | Masked Autoencoders are Scalable Learners of Cellular Morphology | [
"Oren Kraus",
"Kian Kenyon-Dean",
"Saber Saberian",
"Maryam Fallah",
"Peter McLean",
"Jess Leung",
"Vasudev Sharma",
"Ayla Khan",
"Jia Balakrishnan",
"Safiye Celik",
"Maciej Sypetkowski",
"Chi Cheng",
"Kristen Morse",
"Maureen Makes",
"Ben Mabey",
"Berton Earnshaw"
] | https://huggingface.co/papers/2309.16064 | [
"https://github.com/recursionpharma/maes_microscopy"
] | [] | [] | [] | NeurIPS2024 |
|
Workshop/GenBio | https://openreview.net/forum?id=itp5RDMlNV | poster | SE(3) denoising score matching for unsupervised binding energy prediction and nanobody design | [
"Wengong Jin",
"Caroline Uhler",
"Nir Hacohen"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=ineR4aPK9p | oral | Analysis of cellular phenotypes with unbiased image-based generative models | [
"Ruben Fonnegra",
"Mohammad Sanian",
"Zitong Chen",
"Lassi Paavolainen",
"Juan Caicedo"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=iO59l1LFvJ | poster | 2311.12035 | Delta Score: Improving the Binding Assessment of Structure-Based Drug Design Methods | [
"Minsi Ren",
"Bowen Gao",
"Bo Qiang",
"Yanyan Lan"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=iEGdcrWDV1 | poster | On Complex Network Dynamics of an In-Vitro Neuronal System during Rest and Gameplay | [
"Moein Khajehnejad",
"Forough Habibollahi",
"Alon Loeffler",
"Brett Kagan",
"Adeel Razi"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=htwkLbaFhk | poster | Contextualized Networks Reveal Heterogeneous Transcriptomic Regulation in Tumors at Sample-Specific Resolution | [
"Caleb Ellington",
"Ben Lengerich",
"Thomas Watkins",
"Jiekun Yang",
"Hanxi Xiao",
"Manolis Kellis",
"Eric Xing"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=hYlfUTyp6p | oral | TacoGFN: Target Conditioned GFlowNet for Drug Design | [
"Tony Shen",
"Mohit Pandey",
"Martin Ester"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=cplCMo4II4 | poster | Microenvironment Flows as Protein Engineers | [
"Chengyue Gong",
"Lemeng Wu",
"Daniel Diaz",
"Xingchao Liu",
"James Loy",
"Adam Klivans",
"qiang liu"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=bxZMKHtlL6 | oral | AntiFold: Improved antibody structure design using inverse folding | [
"Magnus Høie",
"Alissa Hummer",
"Tobias Olsen",
"Morten Nielsen",
"Charlotte Deane"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=bh8dw3guwY | poster | DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model | [
"Wei Lu",
"Jixian Zhang",
"Huang Weifeng",
"Ziqiao Zhang",
"Chengtao Li",
"Shuangjia Zheng"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=bPcgbKDCUQ | poster | Guiding diffusion models for antibody sequence and structure co-design with developability properties | [
"Amelia Villegas-Morcillo",
"Jana Weber",
"Marcel Reinders"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=b54p3jCgBw | poster | 2305.15441 | Improving few-shot learning-based protein engineering with evolutionary sampling | [
"Muhammad Zaki Jawaid",
"Aayushma Gautam",
"T. Gainous",
"Dan Hart",
"Robin Yeo",
"Timothy Daley"
] | [
"https://github.com/SuperSecretBioTech/evolutionary_monte_carlo_search"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=awRjbuWxe4 | poster | Inpainting Protein Sequence and Structure with ProtFill | [
"Elizaveta Kozlova",
"Arthur Valentin",
"Daniel Nakhaee-Zadeh Gutierrez"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Z4ia7s2tpV | oral | 2311.13466 | Accelerating Inference in Molecular Diffusion Models with Latent Representations of Protein Structure | [
"Ian Dunn",
"David Koes"
] | [
"https://github.com/dunni3/keypoint-diffusion"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=YTrlu38mM4 | oral | 2312.05273 | Evaluating Zero-Shot Scoring for In Vitro Antibody Binding Prediction with Experimental Validation | [
"Divya Nori",
"Simon Mathis",
"Amir Shanehsazzadeh"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=YOGss3XXp0 | poster | Fine-tuned protein language models capture T cell receptor stochasticity | [
"Lewis Cornwall",
"Grisha Szep",
"James Day",
"S R Gokul Krishnan",
"David Carter",
"Jamie Blundell",
"Lilly Wollman",
"Neil Dalchau",
"Aaron Sim"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=XgkYO1S2vM | poster | Harmonic Prior Self-conditioned Flow Matching for Multi-Ligand Docking and Binding Site Design | [
"Hannes Stark",
"Bowen Jing",
"Regina Barzilay",
"Tommi Jaakkola"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=T3ROexdopD | oral | Exploring the building blocks of cell organization as high-order network motifs with graph isomorphism network | [
"Yang Yu",
"Shuang Wang",
"Dong Xu",
"Juexin Wang"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=SckdgVW3Kq | poster | Conditional Generation of Antigen Specific T-cell Receptor Sequences | [
"Dhuvarakesh Karthikeyan",
"Colin Raffel",
"Benjamin Vincent",
"Alex Rubinsteyn"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=SJYY3nQ0cX | poster | Enhancing Language Models for Technical Domains with Dynamic Token Injection | [
"Giorgio Giannone",
"Neil Tenenholtz",
"James Hall",
"Nicolo Fusi",
"David Alvarez-Melis"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Qrx0Dt3RBg | poster | Scalable Multimer Structure Prediction using Diffusion Models | [
"Peter Pao-Huang",
"Bowen Jing",
"Bonnie Berger"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=QrH4bhWhwY | poster | 2301.02748 | Generative Antibody Design for Complementary Chain Pairing Sequences through Encoder-Decoder Language Model | [
"Simon Chu",
"Kathy Wei"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=Pa6mFTZY4R | poster | Generative design for gene therapy: An in vivo validated method | [
"Farhan Damani",
"David Brookes",
"Jeffrey Chan",
"Rishi Jajoo",
"Alexander Mijalis",
"Joyce Samson",
"Flaviu Vadan",
"Cameron Webster",
"Stephen Malina",
"Sam Sinai"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=PQa3giMLZp | poster | Bending and Binding: Predicting Protein Flexibility upon Ligand Interaction using Diffusion Models | [
"Xuejin Zhang",
"Tomas Geffner",
"Matt McPartlon",
"Mehmet Akdel",
"Dylan Abramson",
"Graham Holt",
"Alexander Goncearenco",
"Luca Naef",
"Michael Bronstein"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Od1KtMeAYo | poster | Generating Molecular Conformer Fields | [
"Yuyang Wang",
"Ahmed Elhag",
"Navdeep Jaitly",
"Joshua Susskind",
"Miguel Bautista"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Nf5BxVllgq | poster | PoseCheck: Generative Models for 3D Structure-based Drug Design Produce Unrealistic Poses | [
"Charles Harris",
"Kieran Didi",
"Arian Jamasb",
"Chaitanya Joshi",
"Simon Mathis",
"Pietro Lio",
"Tom Blundell"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Mg2DM0F3AY | poster | A deep generative model of single-cell methylomic data | [
"Ethan Weinberger",
"Su-In Lee"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=JWfvMT43pZ | poster | 2308.11890 | Shape-conditioned 3D Molecule Generation via Equivariant Diffusion Models | [
"Ziqi Chen",
"Bo Peng",
"srinivasan parthasarathy",
"Xia Ning"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=JPOW9FToYX | poster | Sampling Protein Language Models for Functional Protein Design | [
"Jeremie Theddy Darmawan",
"Yarin Gal",
"Pascal Notin"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=HVQoom7ip2 | poster | Parameter-Efficient Fine-Tune on Open Pre-trained Transformers for Genomic Sequence | [
"Huixin Zhan",
"Zijun Frank Zhang"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=FpUqHQSmqC | poster | 2312.02391 | Approximation of Intractable Likelihood Functions in Systems Biology via Normalizing Flows | [
"Vincent Zaballa",
"Elliot Hui"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=FhFglOZbtZ | oral | The Discovery of Binding Modes Requires Rethinking Docking Generalization | [
"Gabriele Corso",
"Arthur Deng",
"Nicholas Polizzi",
"Regina Barzilay",
"Tommi Jaakkola"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=F6LNvZNBsp | poster | regLM: Designing realistic regulatory DNA with autoregressive language models | [
"Avantika Lal",
"Tommaso Biancalani",
"Gökcen Eraslan"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Enqxq6TWoZ | poster | Epitope-specific antibody design using diffusion models on the latent space of ESM embeddings | [
"Tomer Cohen",
"Dina Schneidman-Duhovny"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=Ejw5zOOgLp | poster | An Energy Based Model for Incorporating Sequence Priors for Target-Specific Antibody Design | [
"Yining Huang",
"Steffanie Paul",
"Debora Marks"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=EKt4NQZ47U | poster | 2310.12304 | Preference Optimization for Molecular Language Models | [
"Ryan Park",
"Ryan Theisen",
"Rayees Rahman",
"Anna Cichońska",
"Marcel Patek",
"Navriti Sahni"
] | [
"https://github.com/harmonic-discovery/pref-opt-for-mols"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=E3HN48zjam | poster | 2401.05370 | Autoregressive fragment-based diffusion for pocket-aware ligand design | [
"Mahdi Ghorbani",
"Leo Gendelev",
"Paul Beroza",
"Michael Keiser"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=DpbMk2KOOX | poster | Genomic language model predicts protein co-regulation and function | [
"Yunha Hwang",
"Andre Cornman",
"Sergey Ovchinnikov",
"Peter Girguis"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=DUjUJCqqA7 | poster | Fine-tuning protein Language Models by ranking protein fitness | [
"Minji Lee",
"Kyungmin Lee",
"Jinwoo Shin"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=D6PJjvaE3D | oral | Amalga: Designable Protein Backbone Generation with Folding and Inverse Folding Guidance | [
"Shugao Chen",
"Ziyao Li",
"xiangxiang Zeng",
"Guolin Ke"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=CsjGuWD7hk | poster | Integrating Protein Structure Prediction and Bayesian Optimization for Peptide Design | [
"Negin Manshour",
"Fei He",
"Duolin Wang",
"Dong Xu"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=ChU7MCLk1J | oral | Binding Oracle: Fine-Tuning From Stability to Binding Free Energy | [
"Chengyue Gong",
"Adam Klivans",
"Jordan Wells",
"James Loy",
"qiang liu",
"Alex Dimakis",
"Daniel Diaz"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=CKCNCW9wxB | poster | Generative AI for designing and validating easily synthesizable and structurally novel antibiotics | [
"Kyle Swanson",
"Gary Liu",
"Denise Catacutan",
"James Zou",
"Jonathan Stokes"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=BE2hok0lES | poster | UMD-fit: Generating Realistic Ligand Conformations for Distance-Based Deep Docking Models | [
"Eric Alcaide",
"Ziyao Li",
"Hang Zheng",
"Zhifeng Gao",
"Guolin Ke"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=AlPg6if5PU | oral | DiffDock-Site: A Novel Paradigm for Enhanced Protein-Ligand Predictions through Binding Site Identification | [
"Huanlei Guo",
"Song Liu",
"Mingdi HU",
"Yilun Lou",
"Bingyi Jing"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=ALsSka1db3 | poster | Through the looking glass: navigating in latent space to optimize over combinatorial synthesis libraries | [
"Aryan Pedawi",
"Saulo De Oliveira",
"Henry van den Bedem"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=9BQ3l8OVru | oral | Generative Flow Networks Assisted Biological Sequence Editing | [
"Pouya M. Ghari",
"Alex Tseng",
"Gökcen Eraslan",
"Romain Lopez",
"Tommaso Biancalani",
"Gabriele Scalia",
"Ehsan Hajiramezanali"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=8PbTU4exnV | poster | Combining Structure and Sequence for Superior Fitness Prediction | [
"Steffanie Paul",
"Aaron Kollasch",
"Pascal Notin",
"Debora Marks"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=73wnK2BvWg | poster | Improving Precision in Language Models Learning from Invalid Samples | [
"Niels Larsen",
"Giorgio Giannone",
"Ole Winther",
"Kai Blin"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=6NtRll9VdH | poster | Machine learning derived embeddings of bulk multi-omics data enable clinically significant representations in a pan-cancer cohort | [
"Sanjay Nagaraj",
"ZACHARY MCCAW",
"Theofanis Karaletsos",
"Daphne Koller",
"Anna Shcherbina"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=4k926QVVM4 | poster | Target-Aware Variational Auto-Encoders for Ligand Generation with Multi-Modal Protein Modeling | [
"Khang Ngo",
"Truong Son Hy"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=4HQtWpQ4WG | oral | TopoDiff: Improving Protein Backbone Generation with Topology-aware Latent Encoding | [
"Yuyang Zhang",
"Zinnia Ma",
"Haipeng Gong"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
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Workshop/GenBio | https://openreview.net/forum?id=46okCAggF5 | oral | CodonBERT: Large Language Models for mRNA design and optimization | [
"Sizhen Li",
"Saeed Moayedpour",
"Ruijiang Li",
"Michael Bailey",
"Saleh Riahi",
"Milad Miladi",
"Jacob Miner",
"Dinghai Zheng",
"Jun Wang",
"Akshay Balsubramani",
"Khang Tran",
"Minnie",
"Monica Wu",
"Xiaobo Gu",
"Ryan Clinton",
"Carla Asquith",
"Joseph Skaleski",
"Lianne Boeglin",
"Sudha Chivukula",
"Anusha Dias",
"Fernando Ulloa Montoya",
"Vikram Agarwal",
"Ziv Bar-Joseph",
"Sven Jager"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=3mcBKvkwWg | poster | 2306.14852 | CoarsenConf: Equivariant Coarsening with Aggregated Attention for Molecular Conformer Generation | [
"Danny Reidenbach",
"Aditi Krishnapriyan"
] | [
"https://github.com/ask-berkeley/coarsenconf"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=2JkSb52D1n | poster | 2310.02066 | De Novo Drug Design with Joint Transformers | [
"Adam Izdebski",
"Ewelina Weglarz-Tomczak",
"Ewa Szczurek",
"Jakub Tomczak"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=1wa9JEanV5 | poster | 2310.19685 | DGFN: Double Generative Flow Networks | [
"Elaine Lau",
"Nikhil Murali Vemgal",
"Doina Precup",
"Emmanuel Bengio"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/GenBio | https://openreview.net/forum?id=145TM9VQhx | poster | AMP-Diffusion: Integrating Latent Diffusion with Protein Language Models for Antimicrobial Peptide Generation | [
"Tianlai Chen",
"Pranay Vure",
"Rishab Pulugurta",
"Pranam Chatterjee"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/GenBio | https://openreview.net/forum?id=0gl0SJtd2E | poster | Identifying Neglected Hypotheses in Neurodegenerative Disease with Large Language Models | [
"Spencer Hey",
"Darren Angle",
"Christopher Chatham"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=y4hgiutGdr | poster | 2310.08746 | Robustness to Multi-Modal Environment Uncertainty in MARL using Curriculum Learning | [
"Aakriti Agrawal",
"Rohith Aralikatti",
"Yanchao Sun",
"Furong Huang"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/MASEC | https://openreview.net/forum?id=tF464LogjS | poster | Defining and Mitigating Collusion in Multi-Agent Systems | [
"Jack Foxabbott",
"Sam Deverett",
"Kaspar Senft",
"Samuel Dower",
"Lewis Hammond"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=eL61LbI4uv | poster | 2311.14712 | Multiagent Simulators for Social Networks | [
"Aditya Surve",
"Archit Rathod",
"Mokshit Surana",
"Gautam Malpani",
"Aneesh Shamraj",
"Sainath Reddy Sankepally",
"Raghav Jain",
"Swapneel S Mehta"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/MASEC | https://openreview.net/forum?id=cYuE7uV4ut | oral | Oracles Followers: Stackelberg Equilibria in Deep Multi-Agent Reinforcement Learning | [
"Matthias Gerstgrasser",
"David C. Parkes"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=XjHF5LWbNS | poster | Dynamics Model Based Adversarial Training For Competitive Reinforcement Learning | [
"Xuan Chen",
"Guanhong Tao",
"Xiangyu Zhang"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=X8mSMsNbff | poster | 2402.12673 | Beyond Worst-case Attacks: Robust RL with Adaptive Defense via Non-dominated Policies | [
"Xiangyu Liu",
"Chenghao Deng",
"Yanchao Sun",
"Yongyuan Liang",
"Furong Huang"
] | https://huggingface.co/papers/2402.12673 | [
"https://github.com/umd-huang-lab/protected"
] | [] | [] | [] | NeurIPS2024 |
|
Workshop/MASEC | https://openreview.net/forum?id=QWXwhHQHLv | poster | 2311.16781 | Generation of Games for Opponent Model Differentiation | [
"David Milec",
"Viliam Lisý",
"Christopher Kiekintveld"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/MASEC | https://openreview.net/forum?id=KOZwk7BFc3 | oral | Language Agents as Hackers: Evaluating Cybersecurity Skills with Capture the Flag | [
"John Yang",
"Akshara Prabhakar",
"Shunyu Yao",
"Kexin Pei",
"Karthik R Narasimhan"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=HPmhaOTseN | poster | Second-order Jailbreaks: Generative Agents Successfully Manipulate Through an Intermediary | [
"Mikhail Terekhov",
"Romain Graux",
"Eduardo Neville",
"Denis Rosset",
"Gabin Kolly"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=FuzJ9abiJb | poster | RAVE: Enabling safety verification for realistic deep reinforcement learning systems | [
"Wenbo Guo",
"Taesung Lee",
"Kevin Eykholt",
"Jiyong Jiang"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=FXZFrOvIoc | poster | A Perfect Collusion Benchmark: How can AI agents be prevented from colluding with information-theoretic undetectability? | [
"Sumeet Ramesh Motwani",
"Mikhail Baranchuk",
"Lewis Hammond",
"Christian Schroeder de Witt"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=CZcIYfiGlL | oral | 2311.07815 | Cooperative AI via Decentralized Commitment Devices | [
"Xinyuan Sun",
"Davide Crapis",
"Matt Stephenson",
"Jonathan Passerat-Palmbach"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/MASEC | https://openreview.net/forum?id=5U8PGlJt2S | poster | Robust Q-Learning against State Perturbations: a Belief-Enriched Pessimistic Approach | [
"Xiaolin Sun",
"Zizhan Zheng"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=5HuBX8LvuT | poster | Assessing Risks of Using Autonomous Language Models in Military and Diplomatic Planning | [
"Gabriel Mukobi",
"Ann-Katrin Reuel",
"Juan-Pablo Rivera",
"Chandler Smith"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=4RFv40DWkp | poster | Stackelberg Games with Side Information | [
"Keegan Harris",
"Steven Wu",
"Maria Florina Balcan"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=4831vtb6Bp | poster | Safe Equilibrium | [
"Sam Ganzfried"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=3b8hfpqtlM | oral | 2312.12564 | Leading the Pack: N-player Opponent Shaping | [
"Alexandra Souly",
"Timon Willi",
"Akbir Khan",
"Robert Kirk",
"Chris Lu",
"Edward Grefenstette",
"Tim Rocktäschel"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/MASEC | https://openreview.net/forum?id=1Zb8JjrgSK | poster | 2312.16341 | Harnessing the Power of Federated Learning in Federated Contextual Bandits | [
"Chengshuai Shi",
"Kun Yang",
"Ruida Zhou",
"Cong Shen"
] | [
"https://github.com/shengroup/fedigw"
] | [] | [] | [] | NeurIPS2024 |
||
Workshop/MASEC | https://openreview.net/forum?id=15wSm5uiSE | poster | Decentralized agent-based modeling | [
"Ayush Chopra",
"Arnau Quera-Bofarull",
"Nurullah Giray Kuru",
"Ramesh Raskar"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
Workshop/MASEC | https://openreview.net/forum?id=0O5vbRAWol | oral | I See You! Robust Measurement of Adversarial Behavior | [
"Lars Ankile",
"Matheus X.V. Ferreira",
"David Parkes"
] | [
""
] | [] | [] | [] | NeurIPS2024 |
|||
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track | https://openreview.net/forum?id=zogaeVpbaE | oral | 2406.10215 | DevBench: A multimodal developmental benchmark for language learning | [
"Alvin Wei Ming Tan",
"Chunhua Yu",
"Bria Lorelle Long",
"Wanjing Anya Ma",
"Tonya Murray",
"Rebecca D. Silverman",
"Jason D Yeatman",
"Michael Frank"
] | [
"https://github.com/alvinwmtan/dev-bench"
] | [] | [] | [] | NeurIPS2024 D&B |
||
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track | https://openreview.net/forum?id=zgSnSZ0Re6 | poster | 2402.02500 | Point Cloud Matters: Rethinking the Impact of Different Observation Spaces on Robot Learning | [
"Haoyi Zhu",
"Yating Wang",
"Di Huang",
"Weicai Ye",
"Wanli Ouyang",
"Tong He"
] | [
"https://github.com/haoyizhu/realrobot"
] | [] | [] | [] | NeurIPS2024 D&B |
||
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track | https://openreview.net/forum?id=zg8dpAGl1I | poster | 2312.12044 | XLand-MiniGrid: Scalable Meta-Reinforcement Learning Environments in JAX | [
"Alexander Nikulin",
"Vladislav Kurenkov",
"Ilya Zisman",
"Artem Sergeevich Agarkov",
"Viacheslav Sinii",
"Sergey Kolesnikov"
] | https://huggingface.co/papers/2312.12044 | [
"https://github.com/corl-team/xland-minigrid"
] | [] | [] | [] | NeurIPS2024 D&B |
|
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track | https://openreview.net/forum?id=zQ3qU0xWZ5 | poster | 2407.02680 | kGym: A Platform and Dataset to Benchmark Large Language Models on Linux Kernel Crash Resolution | [
"Alex Mathai",
"Chenxi Huang",
"Petros Maniatis",
"Aleksandr Nogikh",
"Franjo Ivancic",
"Junfeng Yang",
"Baishakhi Ray"
] | https://huggingface.co/papers/2407.02680 | [
""
] | [] | [] | [] | NeurIPS2024 D&B |
|
NeurIPS.cc/2024/Datasets_and_Benchmarks_Track | https://openreview.net/forum?id=zGfKPqunJG | poster | E^3: Exploring Embodied Emotion Through A Large-Scale Egocentric Video Dataset | [
"Wang Lin",
"Yueying Feng",
"WenKang Han",
"Tao Jin",
"Zhou Zhao",
"Fei Wu",
"Chang Yao",
"Jingyuan Chen"
] | [
""
] | [] | [] | [] | NeurIPS2024 D&B |